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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs1608716 chr7:64443401 C/T 3.48E-11 192 13.9 5.9 1.77 KM Plot
LIHC rs162885 chr5:131607320 C/T 2.35E-5 191 13.97 3.23 7.43 KM Plot
LIHC rs162893 chr5:131611298 G/C 2.15E-5 191 13.92 4.67 7.43 KM Plot
LIHC rs162895 chr5:131612556 C/T 2.15E-5 192 7.43 4.67 13.87 KM Plot
LIHC rs1672121 chr21:44410409 C/T 6.15E-6 191 2.7 13.85 13.65 KM Plot
LIHC rs1672133 chr21:44407141 G/T 5.83E-6 191 2.7 14.1 13.57 KM Plot
LIHC rs1672135 chr21:44439617 T/C 7.4E-6 190 2.7 12.9 13.78 KM Plot
LIHC rs16836038 chr2:201803139 C/T 0 192 13.35 13.73 0.37 KM Plot
LIHC rs16836896 chr3:125311262 A/T 0.000394 192 13.6 13.03 1.03 KM Plot
LIHC rs16837131 chr2:202173812 A/C 0 192 0.37 13.38 13.53 KM Plot
LIHC rs16840605 chr4:7598688 A/G 2.43E-9 192 13.15 19.37 0.63 KM Plot
LIHC rs16842071 chr2:201931730 A/G 0.000423 192 13.53 13.8 11.97 KM Plot
LIHC rs16848365 chr1:224637381 A/G 0.000109 192 13.58 13.37 5.25 KM Plot
LIHC rs16871592 chr6:44112723 C/T 9.47E-5 192 13.6 6 3.67 KM Plot
LIHC rs16890963 chr8:41809431 C/T 2.33E-9 192 12.9 14.38 0.63 KM Plot